I just noticed that lately when I go into reverse and less often when going into 1st, and 2nd sometimes I can feel something go clunk.

It happens after I reengage the clutch. Like I push in the clutch go into reverse and let the clutch out and then clunk! It is not all that loud, but you can notice it and kinda feel it a little bit. And sometimes it's smooth sailing.

Any ideas on what it is?

Its a 93 22r-e 4x4 BTW.

 

U-joints?

 

go under and check your drive shafts, your differentials, u joints and cv joints

 

Ok I will look.

So seems like it's def not clutch or tranny eh?

Well I think my CV's are going so I hope its that and not another part since I was going to replace that after my timing chain. Damn I need more money.