For those of you that have the Husky cargo liner for the double shelf system, it is flush with the floor (specifically the pockets on either side ?)

I just got mine and it's about 3" off of the floor/pockets... But, it's marked "double shelf system."

 

I have the husky cargo liner for my '04 and it is formed to fit those lateral pockets/depressions. Is yours not molded at all for the pockets? Mine is labeled as being for the double shelf system which is what I have. I don't know if there is a difference between the one for and the one without, I couldn't find any good pictures on the internet. I got mine from autoanything.com
I would return the cargo liner at their cost.

Herman

 

It's got the molded pockets, they just don't fit into the Toyota pockets (they are about 4" high.)
I ordered from the same place as you.

 

Just checked mine again after your last reply. My sit higher then the pocket, by probably 1/2" or so, not very noticeable. Is your mat molded at all where the pockets are?
Herman