I have noticed since I bought my truck that it sits lower than earlier 3rd gens.
Like 99-01's. My girlfriend keeps telling me I am nuts. Tonight I was parked right next to one, and I am sitting about 2 inches lower. Were those higher from the factory? It was also a 4WD Limited, just 2-3 years older.

 

They did lower the 4runner after 99. Had something to do with safety issues and rollover. You're not crazy, I don't think

 

Well T/Y. Now I'd have to get a 4" lift to just get the 2" over stock I want. I like the way the older trucks look, but I want to go 2" higher. That will mean I have to change CV angles and all now, correct? I just wanted springs & shocks or airbags slapped on and get the longer brake lines and the panhard drop and be done with it. Bad enought I can't find anyone local to lend a hand when I am ready (shops)

 

You will not need a 4" lift to go 2" higher than an older stock runner. If you and that guy bought(for example) the same OME springs, you would set very close to the same height.

 

The 99's with the HD package sit the highest